{"id":12,"date":"2014-11-07T00:27:13","date_gmt":"2014-11-07T00:27:13","guid":{"rendered":"http:\/\/www.hawaii.edu\/microbiology\/asgpb\/?page_id=12"},"modified":"2023-12-28T03:25:25","modified_gmt":"2023-12-28T03:25:25","slug":"publications","status":"publish","type":"page","link":"https:\/\/www.hawaii.edu\/microbiology\/asgpb\/?page_id=12","title":{"rendered":""},"content":{"rendered":"<p><a href=\"http:\/\/www.hawaii.edu\/microbiology\/asgpb\/wp-content\/uploads\/2014\/11\/publicheader2.png\"><img loading=\"lazy\" decoding=\"async\" class=\"aligncenter size-full wp-image-138\" src=\"http:\/\/www.hawaii.edu\/microbiology\/asgpb\/wp-content\/uploads\/2014\/11\/publicheader2.png\" alt=\"publicheader2\" width=\"1100\" height=\"200\" srcset=\"https:\/\/www.hawaii.edu\/microbiology\/asgpb\/wp-content\/uploads\/2014\/11\/publicheader2.png 1100w, https:\/\/www.hawaii.edu\/microbiology\/asgpb\/wp-content\/uploads\/2014\/11\/publicheader2-300x54.png 300w, https:\/\/www.hawaii.edu\/microbiology\/asgpb\/wp-content\/uploads\/2014\/11\/publicheader2-1024x186.png 1024w, https:\/\/www.hawaii.edu\/microbiology\/asgpb\/wp-content\/uploads\/2014\/11\/publicheader2-250x45.png 250w, https:\/\/www.hawaii.edu\/microbiology\/asgpb\/wp-content\/uploads\/2014\/11\/publicheader2-150x27.png 150w\" sizes=\"auto, (max-width: 1100px) 100vw, 1100px\" \/><\/a><\/p>\n<ul>\n<li>\n<h6>Prescott, R.D., Chan, Y.L., Tong, E.J., Bunn, F., Onouye, C.T., Handel, C., Lo, C.C., Davenport, K., Johnson, S., Flynn, M., Saito, J.A., Lee Jr, H., Wong, K., Lawson, B.N., Hiura, K., Sager, K., Sadones, M., Hill, E.C., Esibill, D., Cockell, C.S., Santomartino, R., Chain, P.S.G., Decho, A.W., Donachie, S.P. 2023. Bridging place-based astrobiology education with genomics, including descriptions of three novel bacterial species isolated from Mars analog sites of cultural relevance. <em>Astrobiology<\/em>. 23(12):1348-1367.<\/h6>\n<\/li>\n<li>\n<h6>Wan, X., Saito, J.A., Hou, S., Geib, S.M., Yuryev, A., Higa, L.M., Womersley, C.Z., &amp; Alam, M. 2021. The <em>Aphelenchus avenae<\/em> genome highlights evolutionary adaptation to desiccation. <em>Commun Biol<\/em>. 4(1):1232.<\/h6>\n<\/li>\n<li>\n<h6>Zhang, M., Lv, Y., Hou, S., Liu, Y., Wang, Y., &amp; Wan, X. 2021. Differential mucosal microbiome profiles across stages of human colorectal cancer. <em>Life<\/em>. 11(8):831.<\/h6>\n<\/li>\n<li>\n<h6>Wang, Y., Wan, X., Wu, X., Zhang, C., Liu, J., &amp; Hou, S. 2021. <em>Eubacterium rectale<\/em> contributes to colorectal cancer initiation via promoting colitis. <em>Gut Pathog<\/em>. 13(1):2.<\/h6>\n<\/li>\n<li>\n<h6>Uz Zaman, K.A., Wu, X., Hu, Z., Yoshida, W., Hou, S., Saito, J., Avad, K.A., Hevener, K.E., Alumasa, J.N., &amp; Cao, S. 2021. Antibacterial kaneoheoic acids A-F from a Hawaiian fungus <em>Fusarium<\/em> sp. FM701. <em>Phytochemistry<\/em>. 181:112545.<\/h6>\n<\/li>\n<li>\n<h6>Wang, Y., Zhang, C., Hou, S., Wu, X., Liu, J., &amp; Wan, X. 2020. Analyses of potential driver and passenger bacteria in human colorectal cancer. <em>Cancer Manag Res<\/em>. 12:11553-11561.<\/h6>\n<\/li>\n<li>\n<h6>Wang, C., Wu, X., Bai, H., Zaman, K.A.U., Hou, S., Saito, J., Wongwiwatthananukit, S., Kim, K.S., &amp; Cao, S. 2020. Antibacterial and NF-\u03baB inhibitory lumazine peptides, aspochalasin, \u03b3-butyrolactone derivatives, and cyclic peptides from a Hawaiian <em>Aspergillus flavipes<\/em>. <em>J Nat Prod<\/em>. 83(7):2233-2240.<\/h6>\n<\/li>\n<li>\n<h6>Zaman, K.A.U., Hu, Z., Wu, X., Hou, S., Saito, J., Kondratyuk, T.P., Pezzuto, J.M., &amp; Cao, S. 2020. NF-\u03baB inhibitory and antibacterial helvolic and fumagillin derivatives from <em>Aspergillus terreus<\/em>. <em>J Nat Prod<\/em>. 83(3):730-737.<\/h6>\n<\/li>\n<li>\n<h6>Koster, K.J., Largen, A., Foster, J.T., Drees, K.P., Qian, L., Desmond, E., Wan, X., Hou, S., &amp; Douglas, J.T. 2018. Genomic sequencing is required for identification of tuberculosis transmission in Hawaii. <em>BMC Infect Dis<\/em>. 18(1):608.<\/h6>\n<\/li>\n<li>\n<h6>Koster, K., Largen, A., Foster, J.T., Drees, K.P., Qian, L., Desmond, E.P., Wan, X., Hou, S., &amp; Douglas, J.T. 2018. Whole genome SNP analysis suggests unique virulence factor differences of the Beijing and Manila families of <em>Mycobacterium tuberculosis<\/em> found in Hawaii. <em>PLoS One<\/em>. 13(7):e0201146.<\/h6>\n<\/li>\n<li>\n<h6>Hayashi, K., Busse, H.J., Golke, J., Anderson, J., Wan, X., Hou, S., Chain, P.S.G., Prescott, R.D., &amp; Donachie, S.P. 2018. <em>Rheinheimera salexigens<\/em> sp. nov., isolated from a fishing hook, and emended description of the genus <em>Rheinheimera<\/em>. <em>Int J Syst Evol Microbiol<\/em>. 68(1):35-41.<\/h6>\n<\/li>\n<li>\n<h6>Wan, X., Darris, M., Hou, S., &amp; Donachie, S.P. 2017. Draft genome sequence of a novel <em>Chitinophaga<\/em> sp. strain, MD30, isolated from a biofilm in an air conditioner condensate pipe. <em>Genome Announc<\/em>. 5(42):e01161-17.<\/h6>\n<\/li>\n<li>\n<h6>\u00a0Wan, X., Saito, J.A., Newhouse, J.S., Hou, S., &amp; Alam, M. 2017. The importance of conserved amino acids in heme-based globin-coupled diguanylate cyclases. <em>PLoS One<\/em>. 12(8):e0182782.<\/h6>\n<\/li>\n<li>\n<h6>Wan, X., Koster, K., Qian, L., Desmond, E., Brostrom, R., Hou, S., &amp; Douglas, J. 2017. Genomic analyses of the ancestral Manila family of <em>Mycobacterium tuberculosis<\/em>. <em>PLoS One<\/em>. 12(4):e0175330.<\/h6>\n<\/li>\n<li>\n<h6>Wang, Y., Zhang, C., Zhang, S., Zhao, Z., Wang, J., Song, J., Wang, Y., Liu, J., &amp; Hou, S. 2017. Kanglaite sensitizes colorectal cancer cells to Taxol via NF-\u03baB inhibition and connexin 43 upregulation. <em>Sci Rep<\/em>. 7:1280.<\/h6>\n<\/li>\n<li>\n<h6>Islam, M.S., Saito, J.A., Emdad, E.M., Ahmed, B., Islam, M.M., Halim, A., Hossen, Q.M.M., Hossain, M.Z., Ahmed, R., Hossain, M.S., Kabir, S.M.T., Khan, M.S.A., Khan, M.M., Hasan, R., Aktar, N., Honi, U., Islam, R., Rashid, M.M., Wan, X., Hou, S., Haque, T., Azam, M.S., Moosa, M.M., Elias, S.M., Hasan, A.M.M., Mahmood, N, Shafiuddin, M., Shahid, S., Shommu, N.S., Jahan, S., Roy, S., Chowdhury, A., Akhand, A.I., Nisho, G.M., Uddin, K.S., Rabeya, T., Hoque, S.M.E., Snigdha, A.R., Mortoza, S., Matin, S.A., Islam, M.K., Lashkar, M.Z.H., Zaman, M., Yuryev, A., Uddin, M.K., Rahman, M.S., Haque, M.S., Alam, M.M., Khan, H., &amp; Alam, M. 2017. Comparative genomics of two jute species and insight into fibre biogenesis. <em>Nat Plants<\/em>. 3:16223.<\/h6>\n<\/li>\n<li>\n<h6>Wan, X., Hou, S., Hayashi, K., Anderson, J., &amp; Donachie, S.P. 2016. Genome sequence of <em>Rheinheimera salexigens<\/em> sp. nov. isolated from a fishing hook off O&#8217;ahu, Hawai&#8217;i. <em>Genome Announc<\/em>. 4(6):e01390-16.<\/h6>\n<\/li>\n<li>\n<h6>Wan, X., Hou, S., Burns, S.L., Saito, J.A., &amp; Donachie, S.P. 2016. Draft genome sequence of a novel <em>Marinobacter<\/em> sp. strain from Honolulu Harbor, Hawai&#8217;i. <em>Genome Announc<\/em>. 4(6):e01354-16.<\/h6>\n<\/li>\n<li>\n<h6>Wan, X., Lee, A.J., Hou, S., Ushijima, B., Nguyen, Y.P., Thawley, J.A., &amp; Donachie, S.P. 2016. Draft genome sequence of <em>Piscirickettsia litoralis<\/em>, isolated from seawater. <em>Genome Announc<\/em>. 4(6):e01252-16.<\/h6>\n<\/li>\n<li>\n<h6>Wan, X., Miller, J.M., Rowley, S.J., Hou, S., &amp; Donachie, S.P. 2016. Draft genome sequence of a novel <em>Luteimonas<\/em> sp. strain from coral mucus, Hawai&#8217;i. <em>Genome Announc<\/em>. 4(6):e01228-16.<\/h6>\n<\/li>\n<li>\n<h6>Wan, X., Dasilveira, L., Hou, S., Saito, J.A., &amp; Donachie, S.P. 2016. Draft genome sequence of <em>Terasakiispira papahanaumokuakeensis<\/em> PH27AT, a spiral bacterium from the Northwestern Hawaiian Islands. <em>Genome Announc<\/em>. 4(5):e01166-16.<\/h6>\n<\/li>\n<li>\n<h6>Wan, X., Hou, S., Saito, J.A., Kaneshiro, K.Y., &amp; Donachie, S.P. 2015. Genome sequence of <em>Flavobacterium akiainvivens<\/em> IK-1T, isolated from decaying <em>Wikstroemia oahuensis<\/em>, an endemic Hawaiian shrub. <em>Genome Announc.<\/em>\u00a0 3(5):e01222-15.<\/h6>\n<\/li>\n<li>\n<h6>Teh, B.S., Lau, N.S., Ng, F.L., Abdul Rahman, A.Y., Wan, X., Saito, J.A., Hou, S., Teh, A.H., Najimudin, N., &amp; Alam, M. 2015. Complete genome sequence of the thermophilic <em>Thermus<\/em> sp. CCB_US3_UF1 from a hot spring in Malaysia. <em>Stand Genomic Sci<\/em>. 10:76.<\/h6>\n<\/li>\n<li>\n<h6>Teh, A. H., Saito, J.A., Najimudin, N., &amp; Alam, M. 2015. Open and Lys-His hexacoordinated closed structures of a globin with swapped proximal and distal sites. <em>Sci Rep<\/em>. 5:11407.<\/h6>\n<\/li>\n<li>\n<h6>Wan, X., Hou, S., Phan, N., Malone Moss, J.S., Donachie, S.P., &amp; Alam, M. 2015. Draft genome sequence of <em>Pantoea anthophila<\/em> strain 11-2 from hypersaline Lake Laysan, Hawaii. <em>Genome Announc<\/em>. 3(3):e00321-15.<\/h6>\n<\/li>\n<li>\n<h6>Wan, X., Qian, L., Hou, S., Drees, K.P., Foster, J.T., &amp; Douglas, J.T. 2014. Complete genome sequences of Beijing and Manila family strains of <em>Mycobacterium tuberculosis<\/em>. <em>Genome Announc<\/em>. 2(6):e01135-14.<\/h6>\n<\/li>\n<li>\n<h6>Geib, S.M., Calla, B., Hall, B., Hou, S., &amp; Manoukis, N.C. 2014. Characterizing the developmental transcriptome of the oriental fruit fly, <em>Bactrocera dorsalis<\/em> (Diptera: Tephritidae) through comparative genomic analysis with <em>Drosophila melanogaster<\/em> utilizing modENCODE datasets. <em>BMC Genomics<\/em>. 15:942.<\/h6>\n<\/li>\n<\/ul>\n<ul>\n<li>\n<h6>Mukhametov, A., Newhouse, E.I., Ab Aziz, N., Saito, J.A., &amp; Alam, M. 2014. Allosteric pocket of the dengue virus (serotype 2) NS2B\/NS3 protease: <em>In silico<\/em> ligand screening and molecular dynamics studies of inhibition. <em>J Mol Graph Model<\/em>. 52:103-113.<\/h6>\n<\/li>\n<li>\n<h6>Jamil, F., Teh, A.H., Schadich, E., Saito, J.A., Najimudin, N., &amp; Alam, M. 2014. Crystal structure of truncated hemoglobin from an extremely thermophilic and acidophilic bacterium. <em>J Biochem<\/em>. 156(2):97-106.<\/h6>\n<\/li>\n<li>\n<h6>Saw, J.H., Schatz, M., Brown, M.V., Kunkel, D.D., Foster, J.S., Shick, H., Christensen, S., Hou, S., Wan, X., &amp; Donachie, S.P. 2013. Cultivation and complete genome sequencing of <em>Gloeobacter kilaueensis<\/em> sp. nov., from a lava cave in K\u012blauea Caldera, Hawai&#8217;i. <em>PLoS One<\/em>. 8(10):e76376.<\/h6>\n<\/li>\n<li>\n<h6>Mchunu, N.P., Permaul, K., Abdul Rahman, A.Y., Saito, J.A., Singh, S., &amp; Alam, M. 2013. Xylanase superproducer: genome sequence of a compost-loving thermophilic fungus, <em>Thermomyces lanuginosus<\/em> strain SSBP. <em>Genome Announc<\/em>. 1(3) e00388-13.<\/h6>\n<\/li>\n<li>\n<h6>Mchunu, N.P., Permaul, K., Alam, M., &amp; Singh, S. 2013. Carbon utilization of a thermophilic fungus, <em>Thermomyces lanuginosus<\/em> using phenotypic microarray. <em>Adv Biosci Biotech<\/em>. 4:24-32.<\/h6>\n<\/li>\n<li>\n<h6>Abdul Rahman, A.Y., Usharraj, A.O., Misra, B.B., Thottathil, G.P., Jayasekaran, K., Feng, Y., Hou, S., Ong, S.Y., Ng, F.L., Lee, L.S., Tan, H.S., Muhd Sakaff, M.K.L., Teh, B.S., Khoo, B.F., Badai, S.S., Ab Aziz, N., Yuryev, A., Knudsen, B., Dionne-Laporte, A., Mchunu, N.P., Yu, Q., Langston, B.J., Freitas, T.A.K., Young, A.G., Chen, R., Wang, L., Najimudin, N., Saito, J.A., &amp; Alam, M. 2013. Draft genome sequence of the rubber tree <em>Hevea brasiliensis<\/em>. <em>BMC Genomics<\/em>. 14:75.<\/h6>\n<\/li>\n<li>\n<h6>Ong, S.Y., Pratap, C.B., Wan, X., Hou, S., Abdul Rahman, A.Y., Saito, J.A., Nath, G., &amp; Alam, M. 2013. The genomic blueprint of <em>Salmonella enterica<\/em> subspecies enterica serovar Typhi P-stx-12. <em>Stand Genomic Sci<\/em>. 7(3):483-496.<\/h6>\n<\/li>\n<li>\n<h6>Islam, M.S., Haque, M.S., Islam, M.M., Emdad, E.M., Halim, A., Hossen, Q.M.M., Hossain, M.Z., Ahmed, B., Rahim, S., Rahman, M.S., Alam, M.M., Hou, S., Wan, X., Saito, J.A., &amp; Alam, M. 2012. Tools to kill: Genome of one of the most destructive plant pathogenic fungi <em>Macrophomina phaseolina<\/em>. <em>BMC Genomics<\/em>. 13:493.<\/h6>\n<\/li>\n<li>\n<h6>Wang, J., Na, J.K., Yu, Q., Gschwend, A.R., Han, J., Zeng, F., Aryal, R., Vanburen, R., Murray, J.E., Zhang, W., Navajas-P\u00e9rez, R., Feltus, F.A., Lemke, C., Tong, E.J., Chen, C., Man Wai, C., Singh, R., Wang, M.L., Min, X.J., Alam, M., Charlesworth, D., Moore, P.H., Jiang, J., Paterson, A.H., &amp; Ming, R. 2012. Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution. <em>Proc Natl Acad Sci USA<\/em>. 109:13710-13715.<\/h6>\n<\/li>\n<li>\n<h6>Saw, J.H.W., Yuryev, A., Kanbe, M., Hou, S., Young, A.G., Aizawa, S.I., &amp; Alam, M. 2012. Complete genome sequencing and analysis of <em>Saprospira grandis<\/em> str. Lewin, a predatory marine bacterium. <em>Stand Genomic Sci<\/em>. 6(1):84-93.<\/h6>\n<\/li>\n<li>\n<h6>Ong, S.Y., Pratap, C.B., Wan, X., Hou, S., Abdul Rahman, A.Y., Saito, J.A., Nath, G., &amp; Alam, M. 2012. Complete genome sequence of <em>Salmonella enterica<\/em> subsp. <em>enterica<\/em> serovar Typhi P-stx-12. <em>J Bacteriol<\/em>. 194(8):2115-2116.<\/h6>\n<\/li>\n<li>\n<h6>Teh, B.S., Abdul Rahman, A.Y., Saito, J.A., Hou, S., &amp; Alam, M. 2012. Complete genome sequence of the thermophilic bacterium <em>Thermus<\/em> sp. strain CCB_US3_UF1. <em>J Bacteriol<\/em>. 194(5):1240.<\/h6>\n<\/li>\n<li>\n<h6>Muhd Sakaff, M.K.L., Abdul Rahman, A.Y., Saito, J.A., Hou, S., &amp; Alam, M. 2012. Complete genome sequence of the thermophilic bacterium <em>Geobacillus thermoleovorans<\/em> CCB_US3_UF5. <em>J Bacteriol<\/em>. 194(5):1239.<\/h6>\n<\/li>\n<li>\n<h6>Teh, A.H., Saito, J.A., Baharuddin, A., Tuckerman, J.R., Newhouse, J.S., Kanbe, M., Newhouse, E.I., Rahim, R.A., Favier, F., Didierjean, C., Sousa, E.H., Stott, M.B., Dunfield, P.F., Gonzalez, G., Gilles-Gonzalez, M.A., Najimudin, N., &amp; Alam, M. 2011. Hell&#8217;s Gate globin I: An acid and thermostable bacterial hemoglobin resembling mammalian neuroglobin. <em>FEBS Lett<\/em>. 585:3250-3258.<\/h6>\n<\/li>\n<li>\n<h6>Yu, Q., Tong, E., Skelton, R.L., Bowers, J.E., Jones, M.R., Murray, J.E., Hou, S., Guan, P., Acob, R.A., Luo, M.C., Moore, P.H., Alam, M., Paterson, A.H., &amp; Ming, R. 2009. A physical map of the papaya genome with integrated genetic map and genome sequence. <em>BMC Genomics<\/em>. 10:371.<\/h6>\n<\/li>\n<li>\n<h6>Wan, X., Tuckerman, J.R., Saito, J.A., Freitas, T.A.K., Newhouse, J.S., Denery, J.R., Galperin, M.Y., Gonzalez, G., Gilles-Gonzalez, M.-A., &amp; Alam, M. 2009. Globins synthesize the second messenger bis-(3&#8242;-5&#8242;)-cyclic diguanosine monophosphate in bacteria. <em>J Mol Biol.<\/em> 388:262-270.<\/h6>\n<\/li>\n<li>\n<h6>Fritzinger, D.C., Hew, B.E., Lee, J.Q., Newhouse, J., Alam, M., Ciallella, J.R., Bowers, M., Gorsuch, W.B., Guikema, B.J., Stahl, G.L., &amp; Vogel, C.W. 2008. Derivatives of human complement component C3 for therapeutic complement depletion: a novel class of therapeutic agents. <em>Adv Exp Med Biol.<\/em> 632:293-307.<\/h6>\n<\/li>\n<li>\n<h6>Shakirov, E.V., Salzberg, S.L., Alam, M., &amp; Shippen, D.E. 2008. Analysis of <em>Carica papaya<\/em> telomeres and telomere-associated proteins: insights into the evolution of telomere maintenance in Brassicales. <em>Trop Plant Biol.<\/em> 1:202-215.<\/h6>\n<\/li>\n<li>\n<h6>Nelson, D.R., Ming, R., Alam, M., &amp; Schuler, M.A. 2008. Comparison of cytochrome P450 genes from six plant genomes. <em>Trop Plant Biol.<\/em> 1:216-235.<\/h6>\n<\/li>\n<li>\n<h6>Paull, R.E., Irikura, B., Wu, P., Turano, H., Chen, N.J., Blas, A., Fellman, J.K., Gschwend, A.R., Wai, C.M., Yu, Q., Presting, G., Alam, M., &amp; Ming, R. 2008. Fruit development, ripening and quality related genes in the papaya genome. <em>Trop Plant Biol.<\/em> 1:246-277.<\/h6>\n<\/li>\n<li>\n<h6>Wang, J., Chen, C., Na, J.-K., Yu, Q., Hou, S., Paull, R.E., Moore, P.H., Alam, M., &amp; Ming, R. 2008. Genome-wide comparative analysis of microsatellites in papaya. <em>Trop Plant Biol. <\/em> 1:278-292.<\/h6>\n<\/li>\n<li>\n<h6>Suzuki, J.Y., Tripathi, S., Ferm\u00edn, G.A., Jan, F.-J., Hou, S., Saw, J.H., Ackerman, C.M., Yu, Q., Schatz, M.C., Pitz, K.Y., Y\u00e9pes, M., Fitch, M.M.M., Manshardt, R.M., Slightom, J.L., Ferreira, S.A., Salzberg, S.L., Alam, M., Ming, R., Moore, P.H., &amp; Gonsalves, D. 2008. Characterization of insertion sites in Rainbow papaya, the first commercialized transgenic fruit crop. <em>Trop Plant Biol.<\/em> 1:293-309.<\/h6>\n<\/li>\n<li>\n<h6>Saw, J.H., Mountain, B.W., Feng, L., Omelchenko, M.V., Hou, S., Saito, J.A., Stott, M.B., Li, D., Zhao, G., Wu, J., Galperin, M.Y., Koonin, E.V., Makarova, K.S., Wolf, Y.I., Rigden, D.J., Dunfield, P.F., Wang, L., &amp; Alam, M. 2008. Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium <em>Anoxybacillus flavithermus<\/em> WK1. <em>Genome Biol<\/em>. 9(11):R161.<\/h6>\n<\/li>\n<li>\n<h6>Lyons, E., Pedersen, B., Kane, J., Alam, M., Ming, R., Tang, H., Wang, X., Bowers, J., Paterson, A., Lisch, D., &amp; Freeling, M. 2008. Finding and comparing syntenic regions among <em>Arabidopsis<\/em> and the outgroups papaya, poplar and grape: CoGe with rosids. <em>Plant Phys<\/em>. 148(4):1772-1781.<\/h6>\n<\/li>\n<li>\n<h6>Freeling, M., Lyons, E., Pedersen, B., Alam, M., Ming, R., &amp; Lisch, D. 2008. Many or most genes in <em>Arabidopsis<\/em> transposed after the origin of the order Brassicales. <em>Genome Res<\/em>. 18:1924-1937.<\/h6>\n<\/li>\n<li>\n<h6>Tang, H., Wang, X., Bowers, J.E., Ming, R., Alam, M., &amp; Paterson, A.H. 2008. Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. <em>Genome Res<\/em>. 18:1944-1954.<\/h6>\n<\/li>\n<li>\n<h6>Othman, R., Kiat, T.S., Khalid, N., Yusof, R., Newhouse, E.I., Newhouse, J.S., Alam, M., &amp; Rahman, N.A. 2008. Docking of noncompetitive inhibitors into dengue virus type 2 protease: understanding the interactions with allosteric binding sites. <em>J Chem Inf Model<\/em>. 48(8):1582-1591.<\/h6>\n<\/li>\n<li>\n<h6>Hou, S., Makarova, K.S., Saw, J.H., Senin, P., Ly, B.V., Zhou, Z., Ren, Y., Wang, J., Galperin, M.Y., Omelchenko, M.V., Wolf, Y.I., Yutin, N., Koonin, E.V., Stott, M.B., Mountain, B.W., Crowe, M.A., Smirnova, A.V., Dunfield, P.F., Feng, L., Wang, L., &amp; Alam, M. 2008. Complete genome sequence of the extremely acidophilic methanotroph isolate V4, <em>Methylacidiphilum infernorum<\/em>, a representative of the bacterial phylum <em>Verrucomicrobia<\/em>. <em>Biol Direct<\/em>. 3:26.<\/h6>\n<\/li>\n<li>\n<h6>Saito, J.A., Wan, X., Lee, K.S., Hou, S., &amp; Alam, M. 2008. Globin-coupled sensors and protoglobins share a common signaling mechanism. <em>FEBS Lett<\/em>. 582(13):1840-1846.<\/h6>\n<\/li>\n<li>\n<h6>Stott, M.B., Crowe, M.A., Mountain, B.W., Smirnova, A.V., Hou, S., Alam, M., &amp; Dunfield, P.F. 2008. Isolation of novel bacteria, including a candidate division, from geothermal soils in New Zealand. <em>Environ Microbiol<\/em>. 10(8):2030-2041.<\/h6>\n<\/li>\n<li>\n<h6>Tang, H., Bowers, J.E., Wang, X., Ming, R., Alam, M., &amp; Paterson, A.H. 2008. 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